Field of Science

Five Books: A short reading list for chemistry

Only five books? And the five best books? Last month I did an interview via email with Caspar Henderson (who wrote a marvelous bestiary for the new century: The Book of Barely Imagined Beings) on the best five books I would put on a reading list titled "Chemistry."  It's now up on the site — Five Books.  But the hardest part was not answering the great questions Caspar posed, but figuring out what five books to list. What did I want this list to do? Teach you chemistry? Maybe. Or give you a sense of what I find fascinating and beautiful and compelling about chemistry? Definitely!

I thought about various friends, curious and readers, but who don't have much background in the sciences and math.  What would I pull from my shelves for them to read?  Something that teaches you to decode a bit of the chemistry, a biography - what is the life of a scientist really like.  Something that is compelling, that drags you into a story you can't put down. Something that shows off the beauty of the world at the atomic and molecular level.

Something that teaches you to decode a bit of the chemistry:
Why does asparagus make my wee smell? And 57 other curious food and drink questions by Andy Brunning of Compound Interest. A bold graphical look at the chemistry of what we eat, with lots of quick explanations of weird (but useful) words of science like chromatography. 
What is the life of a scientist really like:
Obsessive Genius: The Inner World of Marie Curie by Barbara Goldsmith.  Of course there had to be Marie Curie. And this unsparing biography of her pulls the curtain away on what it can mean to plunge into research with all your being.
Compelling stories with chemistry at their heart:
The Poisoner's Handbook: Murder and the Birth of Forensic Medicine in Jazz Age New York by Deborah Blum. Some molecules are thugs, some turn witness for the prosecution. Real crimes, real molecules.  (And her new book on the rise of food safety, The Poison Squad, which is in the stack on my desk, is just as good.) 
The beauty of the atomic and molecular world:
H2O: A biography of water by Phillip Ball Chemistry laid out for the layperson with care and delight. Clouds are not what you think!
The Disappearing Spoon: And Other True Tales of Madness, Love, and the History of the World from the Periodic Table of the Elements by Sam Kean. There's a dark side to the periodic table.
Read the whole essay to find out more about what is fascinating about chemistry (at least to me), what I do as a chemist, and of course, about these five books. Want more book recommendations about chemistry? Want to know what the runners up were? Leave me a note in the comments!


Chemistry not your thing? Go read Caspar's bestiary about the wildly improbable creatures that inhabit the very real world, from sea butterflies to yetis (or at least yeti crabs), it's a wide ranging exploration of the corners of the biological world. To quote a reviewer: "There is something lovely about a book that takes on so many disciplines and tackles them with confidence." There is indeed.

[Cross posted from Quantum Theology]

Trying to explain earthing with atoms

My ungrounded feet in rubber boots.
This week the Washington Post has an article headlined "Could walking barefoot on grass improve your health? Some science suggests it can."  The link itself is subtitled: The science behind grounding.

The article gets a lot of things right about atoms (they make up everthing!), but it confuses "free-radicals" with positive ions. (Free radicals don't have to be charged.) Then it tries to explain why negative ions can help. And while it is true that a positive ion and a negative ion can react in some circumstance to produce a neutral compound (think of hydroxide and hydrogen ions reacting to make water in an acid base reaction), random negative ions won't necessarily disarm a free radical.  You need an antioxidant for that, a molecule that can participate in a reaction that can soak up extra electrons.  You still need to eat your vegetable and wear sunscreen.

Negative ions and positive ions co-exist quite nicely in your body. You need those positively charged potassium ions, in fact, to keep your heart beating rhythmically. So on its face, the "science behind grounding" given in the article is bunk. If all those negative ions in the ground started neutralizing all the positive ions in our bodies, we'd be dead.

While I get this is a not a science news piece, but a perspective piece (a "[d]iscussion of news topics with a point of view, including narratives by individuals regarding their own experiences"), I wish someone at the Post had fact-checked the science.  Yes, it feels nice to walk barefoot on the grass, or to be outside.  I'm pretty certain the negative ions aren't the reason why.






Hunting up the ghosts of elements

This post originally appeared at the UNESCO International Year of Light's blog, in October 2015.  The site is no longer available.

Interior of an antique spectroscope.
If you’ve seen the flash of yellow-orange flames when a pot boils over on a gas stove, you’ve gotten a glimpse of the ghost of an atom.  The color is part of the atom’s spectrum.

In the late 17th century, Isaac Newton used the Latin word for ghost, spectrum, to describe the bands of colors he saw when light shone through a prism. One hundred and fifty years later, Joseph von Fraunhofer noticed he could see bright lines instead of the bands of colors when looking at certain flames through a prism.  He went on to develop an instrument to measure these spectral lines, called a spectroscope, and used it to catalog the lines seen in the sun’s light and in the light from other stars.

It would take almost another fifty years to figure out that Fraunhofer’s lines were the ghosts of chemical elements, when Gustav Kirchhoff and Robert Bunsen (the inventor of the ubiquitous Bunsen burner) teamed up to create a spectroscope that used Bunsen’s new hotter, gas burner to ignite the samples.  They noted that that each element produced a characteristic set of lines when burned, a spectral fingerprint, that could be used to identify it.

In October of 1860, Kirchhoff and Bunsen announced they had used their spectroscope to discover a new chemical element, which they named cesium, for the blue color of its principal line. Chemists quickly began to use Bunsen’s spectroscope to find new elements.  A few months later Kirchhoff and Bunsen found two bright ruby red lines in an extract of a silicate mineral lepidolite, the spectral traces of another new element, rubidium.

Thallium’s ghostly green emanations were first observed by William Crookes, indium, ironically named for its violet lines by its color blind discoverer Ferdinand Reich.  Paul-Émile Lecoq de Boisbaudran spectroscopically identified element 66 in a sample painstakingly extracted from his marble hearth, and instead of naming it for the colors of the lines, called it dysprosium, from the Greek for “hard to get” — because it was.

Hunting for new elements spectroscopically meant you didn’t actually need to have any of it in your lab or even on your planet, as long as you could observe the light from a burning sample.  In 1868 several chemists and astronomers independently observed a faint line in the spectrum of the sun, and assigned it to a new element, helium, which as far as they knew did not exist on earth.  It would take nearly 30 years for two Swedish chemists to confirm that it was present on earth — by matching the spectrum with that of a gas found in a uranium ore.  (The helium to be found on earth comes from radioactive decay.)

Spectroscopy certainly helped chemists fill out the periodic table, adding more than a dozen new elements to the collection.  But it also played a significant role in confirming predictive power of periodicity. When Dmitri Mendeleev proposed his version of the periodic table, he left blanks for yet-to-be-discovered elements, underneath elements which should have similar properties.  In 1875, Lecoq, the same man who had so patiently extracted dysprosium from his fireplace, sifted through 4 metric tons of  zincblende to show that it contained traces of a new element which fit neatly into the space Mendeleev had reserved for it underneath aluminum.  Lecoq named the element gallium, in honor of his home, France, and perhaps playing off his own name, as the Latin for le coq, the rooster, is gallus.  It was a powerful demonstration of Mendeleev’s theory.

These ghostly lines produced by elements helped fuel yet another critical discovery that would have far reaching consequences for chemists’ understanding of the periodic table:  quantum mechanics.  Niels Bohr’s quantum mechanical model of the atom opened the door to explaining chemical elements line spectra. Though more accurate and sophisticated quantum mechanical models of the atom now exist, Bohr’s model showed the relationship between the lines and an atom’s electron by insisting that the electrons’ energies were quantized, that is, they could only have certain energies.

So why do atoms have ghosts?  When an atom is heated to high temperatures, as in a flame, the energy it absorbs excites its electrons.  You can think of the electrons in an atom as being on an energy ladder.  They can only have energies that match the rungs of the ladder, and each type of atom has a unique arrangement of the rungs.  When the atom absorbs energy, its electrons move to higher rungs.  Excited electrons are unstable. They quickly return to their original arrangement, giving off some their excess energy in the form of light as they do.  The color, the wavelength) of the light emitted depends on the difference in energy between the rungs.  The colors of light emitted are the ghosts of the energy rungs.  Since each element has a unique pattern of rungs, it will have a unique spectrum of emitted light and so revealing their presence to the sharp eyes of spectroscopists.

Chemists still use the light emitted and absorbed by atoms and molecules to identify their presence.  We hunt for the structure of the universe in its ghosts.

More Information

If you want a way to see the ghosts of atoms, try this DIY folding spectroscope you can attach to your phone. Use it to check out the light from a neon sign or from a street light!

For a wonderful description of the elements, including stories of how they were first discovered, read John Emsley’s Nature’s Building Blocks.